Posts

Harking back to simpler times

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 It has been MANY YEARS since I have posted a blog post on Blogger/Blogspot. Part of me wants to move away from the Google ecosystem (it being one of the companies chiefly responsible for the enshittification (see below) of the modern internet, but most of the alternatives seem a bit... well, inaccessible.  Cory Doctorow's take on it is that things have got worse on the internet, and much has to do with the growth of gargantuan tech monopolies who have decided to screw both the public and businesses, and they're lawyered to the hilt, too big to fail and too big to jail. You can buy the book and support independent booksellers at the same time , rather than That Gargantuan Company, and help the disenshittification effort. It does seem that the world is a bit crazy at the moment - is there hope? Yes there is , and you can see it in the real, ordinary people you meet every day. So go out there, say hi to your neighbour, try to do some good in the world. The enshittocene is not ...

Predictions for Genomics in 2018

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There's no doubt that developments in technology and science hold great promise, and for those of us in healthcare and biomedical research, unlocking the secrets of the genome (there I go, over-egging the pudding in the first sentence) provides a key to understanding and potentially treating many rare disorders. Rare disorders, 80% of which are genetic, affect 6% of the population, which means that having a rare disease is a common problem. Children are massively over-represented in this group, affecting them and their families and society to a If we understand the mechanisms, particularly in relation to the genome, that has to lead to better treatments and improved quality of life for patients and families, right? Well, as in everything, it turns out to be a little more complex than that, and this article from Genomics Education Programme is a fantastic short summary of some of the views of three key thought leaders in UK Genomics - Prof Sue Hill, Prof Bill Newman and Prof F...

Leadership in a time of Psycho

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 I've read quite a few books and articles on Leadership over the years. Some are very good. Some aren't. You do find many themes about leading with care, leading by example, leading from within, living your values, promoting positivity, recognising potential in even the lowliest of others, appreciating and learning from failure, and lots of good wholesome stuff that make you happy to be alive and to Be A Leader. But let's face it - very few of us are actually God or Supreme Imperator of the Universe. We don't have complete control over our environs, nor are we the only "Leaders" out there. There are other Leaders, some of which are in different pecking zones, never mind orders, and nearly all of us are "under" other Leaders, or working in a system where the behaviour of one Leader will influence others. It's like a body, isn't it? All those different parts working together harmoniously towards a shared goal. Bollocks. That'...

The open source of freedom

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IT in the NHS is in a pickle, and it was in a pickle before the May 2017 Ransomware attacks . Here in Northern Ireland we were fortunately spared the problems that occurred in England, and a large part of the thanks for that has to go to our skilled and dedicated IT professionals in the HSC (what we call the NHS over here), who worked round the clock to protect our vital systems. The pickle has a number of elements. Perhaps the most obvious, and certainly the one that has received the most comment, is our over-dependence on legacy software that often cannot run on modern operating systems. Many PCs in the NHS have to remain on Windows XP because they simply will not run on newer versions of Windows, and there is no easy way to get the software updated. Often these systems were procured poorly (no future-proofing built in), specified poorly, the original vendors have been bought over and the product "sunsetted", or the licences expired. So we have ended up needing to retai...

We've let the genome out of the box. What now?

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Much has been said about the promise of Next Generation Sequencing (NGS) to revolutionise diagnosis of rare diseases, and there are many examples of success in this arena. However, the majority of NGS is still being carried out either via recruitment to specific research studies, or as an add-on for very complex cases being seen in large units with strong academic links. Often, genome sequencing comes at the end of a long and expensive diagnostic odyssey. The challenge we face is this: how do we "left-shift" genomics to the more routine clinical scenarios that most of us work in, and turn it into a (phenomenally rich) component of the background clinical information we have at hand when assessing a patient? Drawing on lessons from the UK 100,000 Genomes Inititative and the UK Deciphering Developmental Disorders (DDD) Study, I will apply a UK perspective to this challenge, and try to paint a picture of a world where patients with rare diseases can rapidly avail...